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Biotin-PEG5-azide

Catalog Number ACM1163732895
Product Name Biotin-PEG5-azide
CAS Number 1163732-89-5
Synonyms Biotin-PEG5-azide
IUPAC Name N-(17-azido-3,6,9,12,15-pentaoxaheptadecyl)-5-((3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide
Molecular Weight 532.66 g/mol
Molecular Formula C22H40N6O7S
Canonical SMILES O=C1N[C@@]2([H])CS[C@@H](CCCCC(NCCOCCOCCOCCOCCOCCN=[N+]=[N-])=O)[C@@]2([H])N1
InChI InChI=1S/C22H40N6O7S/c23-28-25-6-8-32-10-12-34-14-16-35-15-13-33-11-9-31-7-5-24-20(29)4-2-1-3-19-21-18(17-36-19)26-22(30)27-21/h18-19,21H,1-17H2,(H,24,29)(H2,26,27,30)/t18-,19-,21-/m0/s1
InChI Key MKXKDMBFPMTVAW-ZJOUEHCJSA-N
Purity ≥98%
Appearance Solid powder
Application Useful for biotinylation of reagents
Shelf Life >3 years if stored properly
Storage Dry, dark and at 0 - 4 C for short term (days to weeks) or -20 C for long term (months to years).
Description Biotin-PEG5-azide is a PEG-based PROTAC linker can be used in the synthesis of PROTAC.
Complexity 671
Covalently-Bonded Unit Count 1
Exact Mass 532.2679
Heavy Atom Count 36
Monoisotopic Mass 532.26791881
Product Type Bioorthogonal Reagents
Topological Polar Surface Area 156 Ų
Custom Q&A

What is the IUPAC name of Biotin-PEG5-azide?

The IUPAC name of Biotin-PEG5-azide is 5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]-N-[2-[2-[2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethyl]pentanamide.

What is the molecular formula of Biotin-PEG5-azide?

The molecular formula of Biotin-PEG5-azide is C22H40N6O7S.

What is the InChIKey of Biotin-PEG5-azide?

The InChIKey of Biotin-PEG5-azide is MKXKDMBFPMTVAW-ZJOUEHCJSA-N.

How many hydrogen bond donor counts are there in Biotin-PEG5-azide?

There are 3 hydrogen bond donor counts in Biotin-PEG5-azide.

What is the XLogP3-AA value of Biotin-PEG5-azide?

The XLogP3-AA value of Biotin-PEG5-azide is 0.3.

What is the topological polar surface area of Biotin-PEG5-azide?

The topological polar surface area of Biotin-PEG5-azide is 156Ų.

How many rotatable bond counts are there in Biotin-PEG5-azide?

There are 23 rotatable bond counts in Biotin-PEG5-azide.

What is the molecular weight of Biotin-PEG5-azide?

The molecular weight of Biotin-PEG5-azide is 532.7 g/mol.

Provide two synonyms for Biotin-PEG5-azide.

Two synonyms for Biotin-PEG5-azide are Biotin-PEG5-N3 and AKOS040741354.

Is Biotin-PEG5-azide canonicalized?

Yes, Biotin-PEG5-azide is canonicalized.

Case Study

Synthesis of new NIR probes from biotin-PEG5-azide

Synthesis of new NIR probes from biotin-PEG5-azide Li, Hang, et al. Journal of Photochemistry and Photobiology B: Biology 217 (2021): 112172.

One cyanine dye, named G0, is an excellent near-infrared fluorophore with high photostability and resistance to photobleaching. Furthermore, the two alkynyl groups in G0 can be easily modified with targeting ligands via a copper(I)-catalyzed alkyne-azide cycloaddition (CuAAC) reaction. Two novel NIR probes, G1 and G2, were developed by conjugating biotin-PEG5-azide to G0. A PEG linker was introduced into the probe structure to reduce its aggregation tendency. First, the octanol-water partition coefficient, absorption intensity and fluorescence intensity of G0, G1 and G2 were compared. The imaging effect of the probe in BR-positive tumor cells and tumor-bearing mice was then studied. Both in vitro and in vivo results indicate that G1 and G2 have a reduced tendency to aggregate in aqueous solutions and can specifically recognize tumors.
Compound G0 (38.0 mg, 0.0648 mmol, 1 eq) and biotin-PEG5-azide
(24.1 mg, 0.0454 mmol, 0.7 eq) were added to CuSO4·5H2O (5.7 mg, 0.0227 mmol, 0.35 eq). Then L-ascorbic acid sodium salt (9.0 mg, 0.0454 mmol, 0.7 equiv) and tris(3-hydroxypropyltriazolylmethyl)amine (THPTA, 9.85 mg, 0.0227 mmol, 0.35 equiv) were added. All compounds were dissolved in N,N-dimethylformamide (DMF) and H2O (DMF:H2O=5:1). The solution was stirred at 25°C for 1.5 h. Afterwards, the solvent was evaporated to dryness. The solid was purified by column chromatography (2-20% MeOH in DCM). After evaporation, G1 was obtained as a dark green solid in 62% yield (45.0 mg, 0.0402 mmol)

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